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Program (NEW!)

DNA31 program

👉 The 🏆 emoticon highlights papers or talks that are considered for the Best Student Paper (🖋️) and/or Best Student Talk (🎤) award. Students eligible for these distinctions are marked with the 🎓 emoticon.

 

☀️ Day 1 (Monday Aug 25, 2025) Amphithéâtre Mérieux, ENS Lyon
   
8:20 Registration & breakfast
8:50-9:00 Opening
9:00-12:00 Morning Session Chair: Constantine Evans (Hamilton Institute, Maynooth University)
9:00-10:00 Keynote talk: Prof. Olivier Bournez (École Polytechnique, France)
  Computing with Ordinary Differential Equations
10:00-10:15 Coffee break
10:15-10:45 Track A: Bin Fu, Timothy Gomez, Ryan Knobel, Austin Luchsinger, Aiden Massie, Marco Rodriguez, Adrian Salinas, Robert Schweller and Tim Wylie.
  Reachability in Deletion-only Chemical Reaction Networks
10:45-11:15 Track B: Maria Galiarnyk🎓, Guillaume Gines and Yannick Rondelez. 🏆🎤
  Directed Evolution at Single-Enzyme level using versatile and ultrasensitive Molecular Programs
11:15-11:45 Track A: Inhoo Lee🎓, Salvador Buse🎓 and Erik Winfree. 🏆🖋️🎤
  Differentiable Programming of Indexed Chemical Reaction Networks
11:45-12:00 Track C: Rajiv Teja Nagipogu and John Reif.
  Neural CRNs: A Natural Implementation of Learning in Chemical Reaction Networks
12:00-13:30 Lunch
13:30-15:15 Early Afternoon Session Chair: Cody Geary (Heidelberg University)
13:30-14:30 Keynote talk: Prof. Dr. Barbara Saccà (ZMB, University Duisburg-Essen)
  Biochemical reactions in nanoconfined and crowded spaces
14:30-15:00 Track A: Gwendal Ducloz🎓, Ahmed Shalaby🎓 and Damien Woods. 🏆🖋️🎤
  Algorithmic hardness of the partition function for nucleic acid strands
15:00-15:15 Track C: Ahmed Shalaby and Damien Woods.
  An efficient algorithm to compute the minimum free energy of interacting nucleic acid strands
15:15-15:30 Coffee break
15:30-16:45 Late Afternoon Session Chair: Abeer Eshra (Hamilton Institute, Maynooth University)
15:30-16:00 Track B: Ping Song, Zhi Weng🎓, Hongyu Shen and Chunhai Fan. 🏆🎤
  Massively Parallel Amplification and Sanitization in DNA Information Storage
16:00-16:30 Track B: Mingweon Chon🎓, Hansol Choi, Woojin Kim, Yoonhae Koh, Yeongjae Choi and Sunghoon Kwon. 🏆🎤
  Random access by single-nucleotide resolution barcode identification for programmable and scalable DNA data storage
16:30-16:45 Track C: Rebecca Sack, Aaron Curdts, Enja Rösch, Florian Wolgast, Thilo Viereck, Meinhard Schilling and Aidin Lak.
  Exponential magnetic cascades for nonenzymatic detection of viral genome
16:45-17:00 Break
17:00-19:00 Posters Session #1, Light buffet 
  Posters: 9, 17, 51, 53, 55, 57, 59, 61, 63, 65, 67, 69, 71, 73, 75, 77, 79, 81, 83, 85, 87, 89, 91, 93, 95, 97, 99, 101, 103, 105, 107, 109.
   
☀️ Day 2 (Tuesday Aug 26, 2025) Amphithéâtre Mérieux, ENS Lyon
 
8:30 Breakfast
9:00-12:00 Morning Session Chair: Dave Doty (University of California Davis)
9:00-10:00 Keynote talk: Prof. Dr. Kerstin Göpfrich (Heidelberg University)
  RNA design: Folds for synthetic cells
10:00-10:15 Coffee break
10:15-10:45 Track A: Constantine Evans, Angel Cervera Roldan, Trent Rogers and Damien Woods.
  Tile blockers as a simple motif to control self-assembly: kinetics and thermodynamics
10:45-11:15 Track B: Myoungseok Kim🎓, Dongsik Seo, Grigory Tikhomirov and Do-Nyun Kim. 🏆🎤
  Programming multiplexed reconfiguration of DNA origami into molecular numeral system and digital encoding
11:15-11:45 Track B: Yifeng Shi and Grigory Tikhomirov.
  Embedding molecular recognition into inorganic nanocrystals with DNA origami wraps
11:45-12:00 Track C: Laura Bourdon, Gerrit David Wilkens, Ayako Yamada, Gaëtan Bellot and Damien Baigl.
  Ultra-fast in situ assembly of programmable DNA nanostructures with living cells
12:00-13:30 Lunch
13:30-15:15 Early Afternoon Session Chair: Florent Becker (Université d'Orléans)
13:30-14:30 Keynote talk: Tribute to Anthony Genot (CNRS, LIMMS, U. Tokyo)
  Organiser: Nicolas Lobato-Dauzier
14:30-15:00 Track B: Nicolas Lobato-Dauzier, Robin Deteix, Alexandre Baccouche, Shu Okumura, Guillaume Gines, Yannick Rondelez, Soo Hyeon Kim, Teruo Fujii, Nathanael Aubert-Kato, Andre Estevez-Torres, Jean-Christophe Galas and Anthony J. Genot.
  Pattern formation in tissue-like arrays of droplets with thermosensitive biochemical switches and clocks
15:00-15:15 Track C: Josh Petrack and David Doty.
  Efficient Simulation of Stochastic Chemical Reaction Networks
15:15-15:30 Coffee break
15:30-16:45 Late Afternoon Session Chair: Giuditta Franco (University of Verona)
15:30-16:00 Track A: Hamidreza Akef🎓, Minki Hhan and David Soloveichik. 🏆🖋️🎤
  Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems
16:00-16:30 Track B: Abeer Eshra, Tristan Stérin, Janet Adio, Constantine Evans and Damien Woods.
  A Thermodynamically Favoured Molecular Computer: Robust, Fast, Renewable, Scalable
16:30-16:45 Track C: David Doty, Mina Latifi and David Soloveichik.
  Analog computation with transcriptional networks
16:45-17:00 Break
17:00-19:00 Posters Session #2, Light buffet 
  Posters: 16, 50, 52, 54, 56, 58, 60, 62, 64, 66, 68, 70, 72, 74, 76, 78, 80, 82, 84, 86, 88, 90, 92, 94, 96, 98, 100, 102, 104, 106, 108.
   
☀️ Day 3 (Wednesday Aug 27, 2025) Amphithéâtre Mérieux, ENS Lyon
 
8:30 Breakfast
9:00-12:00 Morning Session Chair: Shinnosuke Seki (University of Electro-communications, Tokyo)
9:00-10:00 TULIP Award Keynote Talk
  TBA
10:00-10:30 Coffee break
10:30-11:00 Track A: Hope Amber Johnson and Anne Condon.
  A coupled reconfiguration mechanism that enables powerful, pseudoknot-robust DNA strand displacement devices with 2-stranded inputs
11:00-11:30 Track B: Merry Mitra🎓, Rakesh Mukherjee, Križan Jurinovic and Thomas E Ouldridge. 🏆🎤
  Fuel-driven catalytic molecular templating
11:30-12:00 Track A: Zoë Evelyn Mōhalakealoha Derauf🎓 and Chris Thachuk. 🏆🖋️🎤
  Leakless polymerase-dependent strand displacement systems
12:00-13:30 Lunch
13:30-15:30 Posters Session #3
  Posters: All
15:30-16:00 Coffee break
16:00-18:00 Afternoon Session Chair: Shelley Wickham (University of Sidney)
16:00-16:30 Track A: Da-Jung Cho, Szilárd Zsolt Fazekas, Shinnosuke Seki and Max Wiedenhöft🎓. 🏆🖋️🎤
  Programmable Co‑Transcriptional Splicing: Realizing Regular Languages via Hairpin‑Deletion
16:30-17:00 Track B: Cody Geary, Mai Tran, Erik Poppleton and Kerstin Göpfrich.
  Rational Design of an Edge-to-Edge RNA Connector for Programmable Self-Assembly
17:00-17:30 Track A: Pekka Orponen, Shinnosuke Seki and Antti Elonen.
  Secondary Structure Design for Cotranscriptional 3D RNA Origami Wireframes
17:30-18:00 Track B: Feng Zhou, Jiantao Zhang, Paul Chaikin and Ruojie Sha.
  Precision Self-assembly of 3D DNA Nanomaterials for Scalable Nanomanufacturing
   
☀️ Day 4 (Thursday Aug 28, 2025) Amphithéâtre Mérieux, ENS Lyon
 
8:30 Breakfast
9:00-11:45 Morning Session Chair: Luca Cardelli
9:00-10:00 Keynote talk: Prof. Masahiro Takinoue — 瀧ノ上正浩 (Department of Computer Science, Institute of Science Tokyo)
  Dynamical DNA condensate for Molecular Computation
10:00-10:15 Coffee break
10:15-10:45 Track A: Matthew Patitz, Trent Rogers, Phillip Drake and Florent Becker.
  Synchronous Versus Asynchronous Tile-Based Self-Assembly
10:45-11:15 Track B: Križan Jurinović🎓, Rakesh Mukherjee, Luke Fehily and Thomas Ouldridge. 🏆🎤
  Engineering a minimal autonomous DNA replicator
11:15-11:45 Track A: Matthew Patitz and Trent Rogers.
  An axiomatic study of leveraging blockers to self-assemble arbitrary shapes via temperature programming
11:45-12:00 Group photo
12:00-13:30 Lunch
14:00-18:00 Social event (different groups)
19:00-0:00 Banquet: Business meeting, Best Student Paper, Talk and Poster awards
  Restaurant « L'embarcadère » [ map | route from the ENS ]
   
☀️ Day 5 (Friday Aug 29, 2025) Amphithéâtre Mérieux, ENS Lyon
   
8:30 Breakfast
9:00-12:00 Workshop Honouring the Career of Andrew Turberfield
  Organisers: Tom Ouldridge, Jonathan Bath, Damien Woods and Nicolas Schabanel
12:00-13:30 Lunch
13:30-16:30 Workshop Honouring the Career of Anne Condon
  Organisers: Chris Thachuk, Damien Woods and Nicolas Schabanel
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