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Accepted papers

Track A

Gwendal Ducloz, Ahmed Shalaby and Damien Woods.
Algorithmic hardness of the partition function for nucleic acid strands
Hope Amber Johnson and Anne Condon.
A coupled reconfiguration mechanism that enables powerful, pseudoknot-robust DNA strand displacement devices with 2-stranded inputs
Zoë Evelyn Mōhalakealoha Derauf and Chris Thachuk.
Leakless polymerase-dependent strand displacement systems
Constantine Evans, Angel Cervera Roldan, Trent Rogers and Damien Woods.
Tile blockers as a simple motif to control self-assembly: kinetics and thermodynamics
Bin Fu, Timothy Gomez, Ryan Knobel, Austin Luchsinger, Aiden Massie, Marco Rodriguez, Adrian Salinas, Robert Schweller and Tim Wylie.
Reachability in Deletion-only Chemical Reaction Networks
Inhoo Lee, Salvador Buse and Erik Winfree.
Differentiable Programming of Indexed Chemical Reaction Networks
Pekka Orponen, Shinnosuke Seki and Antti Elonen.
Secondary Structure Design for Cotranscriptional 3D RNA Origami Wireframes
Matthew Patitz and Trent Rogers.
An axiomatic study of leveraging blockers to self-assemble arbitrary shapes via temperature programming
Matthew Patitz, Trent Rogers, Phillip Drake and Florent Becker.
Synchronous Versus Asynchronous Tile-Based Self-Assembly
Da-Jung Cho, Szilárd Zsolt Fazekas, Shinnosuke Seki and Max Wiedenhöft.
Programmable Co‑Transcriptional Splicing: Realizing Regular Languages via Hairpin‑Deletion
Hamidreza Akef, Minki Hhan and David Soloveichik.
Computing and Bounding Equilibrium Concentrations in Athermic Chemical Systems

Track B

Ping Song, Zhi Weng, Hongyu Shen and Chunhai Fan.
Massively Parallel Amplification and Sanitization in DNA Information Storage
Abeer Eshra, Tristan Stérin, Janet Adio, Constantine Evans and Damien Woods.
A Thermodynamically Favoured Molecular Computer: Robust, Fast, Renewable, Scalable
Mingweon Chon, Hansol Choi, Woojin Kim, Yoonhae Koh, Yeongjae Choi and Sunghoon Kwon.
Random access by single-nucleotide resolution barcode identification for programmable and scalable DNA data storage
Feng Zhou, Jiantao Zhang, Paul Chaikin and Ruojie Sha.
Precision Self-assembly of 3D DNA Nanomaterials for Scalable Nanomanufacturing
Cody Geary, Mai Tran, Erik Poppleton and Kerstin Göpfrich.
Rational Design of an Edge-to-Edge RNA Connector for Programmable Self-Assembly
Yifeng Shi and Grigory Tikhomirov.
Embedding molecular recognition into inorganic nanocrystals with DNA origami wraps
Myoungseok Kim, Dongsik Seo, Grigory Tikhomirov and Do-Nyun Kim.
Programming multiplexed reconfiguration of DNA origami into molecular numeral system and digital encoding
Nicolas Lobato-Dauzier, Robin Deteix, Alexandre Baccouche, Shu Okumura, Guillaume Gines, Yannick Rondelez, Soo Hyeon Kim, Teruo Fujii, Nathanael Aubert-Kato, Andre Estevez-Torres, Jean-Christophe Galas and Anthony J. Genot.
Pattern formation in tissue-like arrays of droplets with thermosensitive biochemical switches and clocks
Križan Jurinović, Rakesh Mukherjee, Luke Fehily and Thomas Ouldridge.
Engineering a minimal autonomous DNA replicator
Merry Mitra, Rakesh Mukherjee, Križan Jurinovic and Thomas E Ouldridge.
Fuel-driven catalytic molecular templating
Maria Galiarnyk, Guillaume Gines and Yannick Rondelez.
Directed Evolution at Single-Enzyme level using versatile and ultrasensitive Molecular Programs

Track C (Talk + Posters)

#64 Rebecca Sack, Aaron Curdts, Enja Rösch, Florian Wolgast, Thilo Viereck, Meinhard Schilling and Aidin Lak.
Exponential magnetic cascades for nonenzymatic detection of viral genome
#65 Laura Bourdon, Gerrit David Wilkens, Ayako Yamada, Gaëtan Bellot and Damien Baigl.
Ultra-fast in situ assembly of programmable DNA nanostructures with living cells
#80 Rajiv Teja Nagipogu and John Reif.
Neural CRNs: A Natural Implementation of Learning in Chemical Reaction Networks
#88 Ahmed Shalaby and Damien Woods.
An efficient algorithm to compute the minimum free energy of interacting nucleic acid strands
#91 David Doty, Mina Latifi and David Soloveichik.
Analog computation with transcriptional networks
#94 Josh Petrack and David Doty.
Efficient Simulation of Stochastic Chemical Reaction Networks

Track C (Posters)

#9 Hajar Al-Zarah, Maged Serag, Haroon Butt, Magdy Mahfouz and Satoshi Habuchi.
Optimization and Characterization of DNA Origami Delivery into Isolated Plant Cells
#16 Karen Lizbeth Cardos Tisnado, Leo Sala and Jaroslav Kocišek.
Low and High Linear Energy Transfer Radiation Damage to DNA Origami
#17 Jangwon Kim, Jaewon Lee and Seungwoo Lee.
Crosstalk-free DNA Origami Assembly for Optical Device Fabrication via Au Prospector Integration
#50 Rajiv Teja Nagipogu and John Reif.
A DNA Tile Assembly Model for Genus Identification of 3D Polycubes
#51 Anshika Mishra and Matthew R. Lakin.
Chirally mismatched DNA strand displacement
#52 David Fernandez Bonet and Ian Hoffecker.
Do DNA Barcode networks benefit from promiscuity?
#54 David Daniel Ruiz Arce, Leo Sala, Protiva Václav and Jaroslav Kočišek.
Programmable assembly of hybrid microsphere complexes using DNA origami.
#55 Hajar Ajiyel, Anthony Genot, Soo Hyeon Kim, Nicolas Schabanel, Mathieu Leocmach, Catherine Barentin and Hervé Guillou.
Insight into the physics of DNA nanostars hydrogel formation
#56 Anshika Mishra, Tracy Mallette and Matthew R. Lakin.
On degradation-induced leak in heterochiral DNA strand displacement cascades
#57 Mayu Okumura and Nathanael Aubert-Kato.Generation of DNA sequences for encoding and storing information using FBGAN
#58 Luca Monari, Ina Braun, Erik Poppleton and Kerstin Göpfrich.
PyFuRNAce: An integrated design engine for RNA origami
#59 Kohei Nishiyama, Piet J. M. Swinkels, Brigitta Dúzs and Andreas Walther.
Micropatterned Reaction Hubs for Spatiotemporal Programming of DNA Reaction Networks
#60 Franziska Kotsch, Alexander Hebel, Bas Bögels and Friedrich C. Simmel.
Exploring Molecular Pattern Recognition via Multiplex qPCR
#61 Tristan Sterin.
Determination of the fifth Busy Beaver value
#62 Karin Yamamoto and Yuki Suzuki.
Connexin-inspired DNA origami nanopores for modeling intercellular communication
#63 Ayu Sakamoto and Yuki Suzuki.
Self-limiting assembly of shape-reconfigurable DNA origami nanostructures
#66 Shin Watanebe and Yuki Suzuki.
Signal-Induced Construction of Catenated DNA Origami structures via Transformation-Coupled Assembly
#67 Sebastian Sakowski, Markus Holzer, Christian Rauch, Tomasz Poplawski, Mannat Jain and David Page.
Biomolecular Computers Application for Cancer Molecular Diagnosis
#68 Michael Matthies, Petr Šulc and Franz Hanrieder.
Signal Passing Inside a Wireframe DNA Origami Cube
#69 Amit Nelkin, Sarah Goldberg and Roee Amit.
Strand Displacement System for On-Site Forensic DNA Detection
#70 Yarong Shi, Cendrine Faivre-Moskalenko and Nicolas Schabanel.
Random walk on a DNA origami to solve mazes: a biophysical approach based on AFM
#71 Ho-Lin Chen, Xiang Huang and Andrei Migunov.
The Russian Doll Scheme: Simulating Stochastic CRNs via Termolecular Population Protocols
#72 Erik Poppleton, Tim Karrasch, Camilo Aponte-Santamaría, Frauke Gräter and Kerstin Göpfrich.
MD simulations of RNA-membrane interactions
#73 Yunshi Yang, Cees Dekker and Haocun Sun.
Bottom-Up design of RNA filaments for synthetic cell division
#74 Rakesh Mukherjee and Thomas Ouldridge.
Towards sequence-defined polymers with DNA-based catalytic templating
#75 Chia-Yu Sung, Aneesh Vanguri and David Soloveichik.
Non-complementary strand commutation prevents leakage in thermodynamic systems
#76 Kate Collins, Claire Stanley and Thomas Ouldridge.
A simple, versatile method to pattern DNA inside microfluidic devices
#77 Hyeyun Jung, Alexander Jackson, Patricia Muller and Harold Fellermann.
Systematic Buffer Optimisation for Cu2+ Dependent DNAzyme
#78 Siyuan Stella Wang, Matthew Aquilina, Florian Katzmeier, Huangchen Cui, Jaewon Lee and William Shih.
Solid-phase assembly of micrometer-scale crisscross DNA origami structures
#79 Jakub Palacka, Johnny Nguyen, Matthew Vu, Ahmad Kaddoura, Erik Benson and Abdulmelik Mohammed.
Design and Synthesis of Eulerian-Routed Higher-Genus Wireframe DNA Origami
#81 Antti Elonen, Kaisla Nyblom and Pekka Orponen.
DNAforge 2.0: A Modular Design Tool for 3D Nucleic Acid Wireframes
#82 Paul Bruand, Adrien Rey, Soo Hyeon Kim and Anthony Genot.
Light-directed data writing with DNA sequencing surfaces
#83 Audrey Cochard, Lucas Pinède, Yannick Tauran, Vincent Salles, Anthony J. Genot and Soo Hyeon Kim.
Emergence of a new material through ligation of DNA hydrogels
#84 Eyal Perry, Jan O. Tiepelt and Joseph M. Jacobson.
DNA Canvas: fabricating reusable 2D nanoarrays on a chip with >1M uniquely-addressable features at <10nm spacing
#85 Shogo Kai and Yusuke Sato.
Spatiotemporal regulation of LLPS of DNA nanostructure by DNA chemical reaction network
#86 Antoine Anastassiades, Guillaume Ginès and Yannick Rondelez.
Signal Propagation with Reaction-Diffusion for Neuromorphic Computing
#87 Vasiliy Znamenskiy, Rafael Niyazov, Joel Hernandez and Tudor Spataru.
Molecular Computation via Hydrogen-Bond Networks in Confined Aqueous Nanostructures
#89 Rory Majule, Kyvalya Reddy, Oren Fox, Chris Takahashi and Jeff Nivala.
eChromatin: Developing a Cell-Free Gene Expression Platform Using Targeted Induced Steric Hinderance within DNA Arrays
#90 Aneesh Vanguri, Antoni Szeglowski and David Soloveichik.
Anneal Trapping Prevents Thermodynamic Equilibrium in Non-Complementary DNA Strand Commutation
#92 Bradley Harding and Shelley Wickham.
3-bit fluorescence reporting using RNA aptamers
#93 Chandler Petersen, Luca Cardelli, Yuan-Jyue Chen and Georg Seelig.
Sequenceable Molecular Event Recorders with Scalable DNA Circuits
#95 Keita Abe, Shin-Ichiro Nomura and Satoshi Murata.
Experimental platform for spatially configurable DNA-based reaction-diffusion system
#96 Hirotake Udono, Shin-Ichiro M. Nomura and Masahiro Takinoue.
Non-equilibrium Fluid Behavior of DNA Liquid Condensates Driven by Light Irradiation
#97 Emma Brix, Julien Richirt, Alexis Vlandas, Vincent Bouchet and Alexandre Baccouche.
From Marine Biology to Biomaterials: toward DNA-Guided Calcite Formation in Artificial Cells
#98 Sing-Ming Chan, Anastasiya Malyshava, Wooli Bae and Thomas Ouldridge.
Novel Strand Displacement Mechanisms for Data Manipulation in DNA Nanostructure-Based Data Storage Devices
#99 Mengfan Tian, Qishu Zhang, Simon Vecchioni, Yoel Ohayon, Ruojie Sha, Bryan Wei and Wen Wang.
Addressable DNA Nanocrystals Self-Assembled with Tensegrity Triangles
#100 Rajagopal Subramaniam Chandrasekar and Karthik Raman.
Designing DNA-based RNNs for Temporal Learning and Memory
#101 Janet Adio, Abeer Eshra, Tristan Stérin, Constantine Evans and Damien Woods.
Scaling Up a Thermodynamically Favoured Computer
#102 Cai Wood and Damien Woods.
Tethered Tile Bots: Folding Shapes Programatically
#103 Bahram Ahmadian, Yannick Rondelez and Guillaume Gines.
Active Learning-based Workflow for Optimizing Molecular Classifier
#104 Angel Cervera Roldan, Damien Woods and Constantine Evans.
Kinetic simulation of thermodynamically-favoured molecular computation
#105 Satofumi Kato, Masahiro Takinoue and Hiroaki Onoe.
Aptamer Recognition and DNA Strand Displacement-Based Swelling Hydrogels for Chemical Sensing
#106 Daichi Iwata, Keiji Murayama, Ken Komiya, Keita Abe, Satoshi Murata, Hideaki Matsubayashi and Shin-Ichiro Nomura.
Control of Gene expression in synthetic cells using photoresponsive molecular switches
#107 Yoshihiro Higashinakagawa, Amane Matsuzawa and Shinnosuke Seki.
Delay-tolerant oritatami binary counter
#108 Ryusei Kawabe, Keita Abe, Hideaki Matsubayashi, Kaori Aso, Takashi Nakakuki, Satoshi Murata and Shin-Ichiro Nomura.
Transmembrane Signaling for DNA Computing: Towards the construction of synthetic immune cells
#109 Erik D. Demaine, Timothy Gomez, Markus Hecher, Ryan Knobel, Marco Rodriguez, Robert Schweller and Tim Wylie.
Quantifying Tile Assemblies: Can We Hope for Approximations?

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